mrbles.pipeline

Pipeline Classes and functions

This files contains the pipeline for the MRBLEs analysis.

../_images/pipeline-diagram.png

Functions

get_stats
get_stats_norm
get_stats_per_channel_and_code
get_stats_per_code
get_weighted_stats

Classes

Analyze(dataframe[, seq_list, images, masks]) Analyze data MRBLE data and return per-code statistics.
Decode(target[, seq_list, decode_channels]) Decode MRBLEs.
Extract([function]) Extract data from images using masks.
Find(bead_size[, pixel_size, border_clear, …]) Find MRBLEs in brightfield images.
Images([folders, file_patterns, data, channels]) Load images into mrbles dataframe.
Ratio(reference_spectra[, background]) Generate spectrally unmix ratio images.
References(folders, files, object_channel, …) Create reference spectra.
Settings(objects, object_names) Settings object.